Publications

Preprints

  • Su H, Li X, Born S, Honey CJ, Chen J, Lee H (preprint) Neural dynamics of spontaneous memory recall and future thinking in the continuous flow of thoughts. bioRxiv 2024.10.02.616300 [bioRxiv] [PDF ]
  • Tomita TM, Barense MD, Honey CJ (preprint) The Similarity Structure of Real-World Memories. bioRxiv [bioRxiv] [PDF]
  • Rahimi Moghaddam S, Bu F, Honey CJ (preprint) Learning Representations from Temporally Smooth Data.  arXiv 2012.06694 [ arXiv ] [PDF]
  • Himberger KD, Finn HY, Honey CJ (preprint) On the Automaticity of Visual Statistical Learning. PsyArXiv r659w [ PsyArXiv ] [PDF ]
  • Huffman G, Pratt J, Honey CJ (preprint) Serial dependence transfers between perceptual objects. bioRxiv, 165399. [ biorXiv ]

2024

  • Poldrack et al. (2024) The Past, Present, and Future of the Brain Imaging Data Structure (BIDS). Imaging Neuroscience. 2:1-19 [ journal ][ PDF ]
  • Moon J-Y, Müsch K, Schroeder CE, Valiante TA, Honey CJ (in press). Inter-regional delays fluctuate in the human cerebral cortex.  eLife  [ PDF ] [ bioRxiv ]

2023

  • Rahimi Moghaddam S, Honey CJ. Boosting Theory-of-Mind Performance in Large Language Models via Prompting (2023). arXiv 2304.11490. [ arXiv ] [ PDF ] [ data ]
  • Honey CJ, Mahabal A, Bellana B (2023) Psychological Momentum. Current Directions in Psychological Sciences. 32 (4): 1-9 [ journal ] [  PDF ]

2022

  • Martin CB, Hong B, Newsome RN, Savel K, Meade M, Xia A, Honey CJ, Barense M (2022). A smartphone intervention that enhances real-world memory and promotes differentiation of hippocampal activity in older adults. Proceedings of the National Academy of Sciences, USA. 119 (51), e2214285119 [ PsyArXiv ] [journal] [ PDF ]
  • Armeni K, Honey CJ, Linzen T (2022) Short-term memory in neural language models. Conference on Natural Language Learning (CoNLL). [arXiv] [ PDF ]
  • Honey CJ, Chen J (2022) Translation Across Brains and Across Time in Steyn J, editor. Translation: Crafts, Contexts, Consequences. Cambridge: Cambridge University Press [publisher]
  • Bellana B, Mahabal A, Honey CJ (2022) Narrative thinking lingers in spontaneous thought. Nature Communications 13: 4585. [ journal ] [ PDF ] [ preprint  ] [ code and data ]
  • Dima DC, Tomita T, Honey CJ, Isik, L (2022) Social-affective features drive human representations of observed actions. eLife 11:e75027. [ bioRxiv ] [ journal ][PDF]

2021

  • Chien HSY, Turek JS, Beckage N, Vo VA, Honey CJ, Wilke T (2021) Long Short-Term Memory with Slower Information Decay. International Conference on Machine Learning: LatinX in AI (LXAI) Research Workshop [ arXiv ] [ PDF ]
  • Nastase SA, Liu Y-F, Hillman H, Zadbood A, Hasenfratz L, Keshavarzian N, et al. (2021) Narratives: fMRI data for evaluating models of naturalistic language comprehension. Scientific Data.  8:250 [ GitHub ] [ journal ] [ PDF ]
  • Chien HSY, Zhang J, Honey CJ (2021) Mapping the Timescale Organization of Neural Language Models. International Conference on Learning Representations, ICLR 2021.  [ arXiv ] [ PDF ]

2020

  • Woo JH, Honey CJ, Moon JY (2020) Phase and amplitude dynamics of coupled oscillator systems on complex networks. Chaos. 30(12): 121102. [ journal ] [ PDF ]
  • Chien HYS, Honey CJ. (2020) Constructing and Forgetting Temporal Context in the Human Cerebral Cortex. Neuron 106 (4): 675-686  [ PubMed Central ] [ journal ] [ PDF ]
  • Müsch K, Himberger KD, Tan KM, Valiante TA, Honey CJ (2020). Transformation of Speech Sequences in Human Sensorimotor Circuits. Proceedings of the National Academy of Sciences, USA [ journal ] [ PDF ]
  • X Zuo, CJ Honey, MD Barense, D Crombie, KA Norman, U Hasson, J Chen (2020) Temporal integration of narrative information in a hippocampal amnesic patient. NeuroImage 213, 116658 [ journal ][ biorXiv ]

2019

  • Holdgraf, C., Appelhoff, S., Bickel, S., Bouchard, K., D’Ambrosio, S., David, O., … & Gorgolewski, K. J. (2019). iEEG-BIDS, extending the Brain Imaging Data Structure specification to human intracranial electrophysiology. Scientific Data, 6. [ PubMed ] [ PDF ]

2018

  • Himberger KD, Chien HY, Honey CJ (2018). Principles of Temporal Processing Across the Cortical Hierarchy. Neuroscience. [ PubMed ]
  • Müsch K, Honey CJ (2018, Commentary). Causal Evidence for a Neural Component of Spatially Global Hemodynamic Signals. Neuron, 97(4): 734-736. [ PDF ] [ PubMed ]
  • Keller CJ, Huang Y, Herrero JL, Fini M, Du V, Lado F, Honey CJ, Mehta A. (2018). Induction and quantification of excitability changes in human cortical networks. Journal of Neuroscience: 1088–17. [ PDF ]
  • Haufe S, DeGuzman P, Henin S, Arcaro MJ, Honey CJ, Hasson U, Parra LC (2018) Reliability and correlation of fMRI, ECoG and EEG during natural stimulus processing. NeuroImage. 179, pp.79-91 [ PubMed ]

2017

  • Honey CJ, Valiante T (2017, Commentary). Neuroscience: When a Single Image Can Cause a Seizure. Current Biology, 27(10), R394-R397. [ PDF ] [ PubMed ]
  • Honey CJ, Newman EL, Schapiro AC (2017). Switching between internal and external modes: a multi-scale learning principle. Network Neuroscience. 1 (4): 339–356 [ PDF ]
  • Vodrahalli K, Chen PH, Liang Y, Baldassano C, Chen J, Yong E, Honey CJ, Hasson U, Ramadge P, Norman KA, Arora S (2017). Mapping between fMRI responses to movies and their natural language annotations. NeuroImage. [ arXiv ] [ PDF ]
  • Groppe DM, Bickel S, Dykstra AR, Wang X, Mégevand P, Mercier MR, Lado FA, Mehta AD, Honey CJ (2017) iELVis: An open source MATLAB toolbox for localizing and visualizing human intracranial electrode data. Journal of Neuroscience Methods , 281:40-48 [ bioRxiv ] [PDF]
  • Yeshurun Y, Swanson S, Simony E, Chen J, Lazaridi C, Honey CJ, Hasson U (2017) Same Story, Different Story: The Neural Representation of Interpretive Frameworks. Psychological Science , 1-13. [ PDF ] [ PubMed ]
  • Chen J, Leong YC, Honey CJ, Yong CH, Norman KA, Hasson U (2017) Shared memories reveal shared structure in neural activity across individuals. Nature Neuroscience 20 (1): 115-125. [ PDF ] [ PubMed ] [ bioRxiv ]

2016

  • Lositsky O, Chen J, Toker D, Honey CJ, Poppenk JL, Hasson U, Norman KA (2016) Neural Pattern Change During Encoding of a Narrative Predicts Retrospective Duration Estimates. eLife 5:e16070 [ eLife ] [ PubMed ] [ PDF ]
  • Simony E, Honey CJ, Chen J, Lositsky O, Yeshurun Y, Wiesel A, Hasson U (2016) Dynamic reconfiguration of the default mode network during narrative comprehension. Nature Communications , 7 (12141) [ PDF ][ PubMed ]
  • Gaiteri C, Mostafavi S, Honey CJ, De Jager PL, Bennett DA (2016) Genetic variants in Alzheimer disease — molecular and brain network approaches. Nature Reviews Neurology , 12:413-7 [ PDF ][ PubMed ]
  • Honey CJ, Chen J, Müsch K, Hasson U (2016, Commentary) How Long is Now? The Multiple Timescales of Language Processing. Commentary on: Christiansen & Chater “The Now-or-Never Bottleneck: A Fundamental Constraint on Language.” Behavioral and Brain Sciences 39. [ PDF ] [ PubMed ]
  • Foster BL, He BJ, Honey CJ, Jerbi K, Maier A, Saalmann YB (2016) Spontaneous Neural Dynamics and Multi-scale Network Organization. Frontiers in Systems Neuroscience , 10(7) [ PDF ][ PubMed ]

2015

  • Chen J, Hasson U, Honey CJ (2015, Preview). Processing Timescales as an Organizing Principle for Primate Cortex. Neuron, 88(2):244-6. [ PDF ] [ Target article by Chaudhuri et al. (2015) ]
  • Chen J, Honey CJ, Simony E, Arcaro MJ, Norman KA, Hasson U (2015). Accessing Real-Life Episodic Information from Minutes versus Hours Earlier Modulates Hippocampal and High-Order Cortical Dynamics. Cerebral Cortex, 26(8):3428-3441. [ PDF ][ PubMed ]
  • Hasson U, Chen J, Honey CJ (2015) Hierarchical process memory: memory as an integral component of information processing. Trends in Cognitive Sciences 19(6):304-313 [ PDF ][ PubMed ]
  • Ames DL, Honey CJ, Chow MA, Todorov A, Hasson U (2015) Contextual alignment of Cognitive and Neural Dynamics. Journal of Cognitive Neuroscience, 27(4):655-64. [ PDF ][ PubMed ]
  • Schmälzle R, Häcker F, Honey CJ, Hasson U (2015) Engaged listeners: Shared neural processing of powerful political speeches. Social Cognitive and Affective Neuroscience, 10(8): 1137-43. [ PDF ][ PubMed ]
  • Arcaro MJ, Honey CJ, Mruczek REB, Kastner S, Hasson U (2015) Widespread correlation patterns of fMRI signal across visual cortex reflect eccentricity organization. eLife 4:e03952 [ PDF ] [ PubMed ] [ eLife ]

2014

  • Silbert LJ, Honey CJ, Simony E, Poeppel D, Hasson U (2014) Coupled neural systems underlie the production and comprehension of naturalistic narrative speech. Proceedings of the National Academy of Sciences, USA , 111(43):E4687-96. [ PDF ][ PubMed ]
  • Keller CJ, Honey CJ, Mégevand P, Entz L, Ulbert I, Mehta AD (2014) Mapping human brain networks with cortico-cortical evoked potentials. Philosophical Transactions of the Royal Society B 369 (1653): 20130528 [ PDF ][ PubMed ]
  • Keller CJ, Honey CJ, L Entz, Bickel S, Groppe D, Tóth E, Ulbert I, Lado F, Mehta AD (2014) Corticocortical evoked potentials reveal projectors and integrators in human brain networks. Journal of Neuroscience , 34(27):9152-63. [ PDF ][ PubMed ]
  • Lerner Y, Honey CJ, Katkov M, Hasson U (2014) Temporal scaling of neural responses to compressed and dilated natural speech. Journal of Neurophysiology, 111(12):2433-44. [ PDF ] [ PubMed ]
  • Miller KJ, Honey CJ, Hermes D, Rao RPN, denNijs M, Ojemann JG (2014) Broadband changes in the cortical surface potential track activation of functionally diverse neuronal populations. NeuroImage, 85(2):711-720 [ PDF ][ PubMed ]

2013

  • Stephens G, Honey CJ, Hasson U (2013) A Place for Time: The Spatiotemporal Structure of Neural dynamics During Natural Audition.  Journal of Neurophysiology, 110(9):2019-2026 [ PDF ] [ PubMed ]
  • Regev M, Honey CJ, Simony E, Hasson U (2013) Selective and invariant neural responses to spoken and written narratives. Journal of Neuroscience, 33(4):15978-15988 [ PDF ] [ PubMed ]
  • Schmälzle R, Häcker F, Renner B, Honey CJ, Schupp HT (2013) Neural Correlates of Risk Perception during Real-Life Risk Communication. Journal of Neuroscience, 33(25):10340-7 [ PDF ] [ PubMed ]
  • Sporns O, Honey CJ (2013) Topographic Dynamics in the Resting Brain. Neuron, 78(6): 955-956 [ PDF ] [ PubMed ]
  • Keller CJ, Bickel S, Honey CJ, Groppe DM, Entz L, Craddock RC, Lado FA, Kelly C, Milham M, Mehta AD (2013) Neurophysiological Investigation of Spontaneous Correlated and Anticorrelated Fluctuations of the BOLD Signal. Journal of Neuroscience, 33(15):6333-6342 [ PDF ] [ PubMed ]

2012

  • Honey CJ*, Thompson CR*, Lerner Y, Hasson U (2012) Not Lost in Translation: Neural Responses Shared Across Languages. Journal of Neuroscience, 32(44):15277-83. [ PDF ][ PubMed ]
  • Honey CJ, Thesen T, Donner TH, Silbert LJ, Carlson CE, Devinsky O, Doyle WK, Rubin N, Heeger DJ, Hasson U (2012) Slow Dynamics in Human Cerebral Cortex and the Accumulation of Information over Long Timescales. Neuron, 76(2):423-434[ PDF ][ PubMed ]
  • Miller KJ, Foster BL, Honey CJ (2012, Opinion) Does rhythmic entrainment represent a generalized mechanism for organizing computation in the brain? Frontiers in Computational Neuroscience, 6:85 [ PDF ] [ PubMed ]
  • Miller KJ, Hermes D, Honey CJ, Hebb AO, Ramsey NF, Knight RT, Ojemann JG, Fetz EE (2012) Human motor cortical activity is selectively phase-entrained on underlying rhythms. PLoS Computational Biology, 8(9): e1002655 [ PDF ] [ PubMed ]
  • Ben-Yakov A, Honey CJ, Lerner Y, Hasson U (2012) Loss of reliable temporal structure in event-related averaging of naturalistic stimuli. NeuroImage, 63(1):501-6 [ PDF ] [ PubMed ]
  • Hasson U, Honey CJ (2012) Future trends in Neuroimaging: neural processes as expressed within real-life social contexts. NeuroImage, 62(2):1272-8 [ PDF ] [ PubMed ]

2011

  • Lerner YL, Honey CJ, Silbert LJ, Hasson U (2011) Topographic Mapping of a Hierarchy of Temporal Receptive Windows Using a Narrated Story. Journal of Neuroscience, 31(8):2906-2915 [ PDF ] [ PubMed ]

2010

  • Miller KJ, Hermes D, Honey CJ, Sharma M, Rao RP, Den Nijs M, Fetz EE, Sejnowski TJ, Hebb AO, Ojemann JG, Makeig S, Leuthardt EC (2010). Dynamic modulation of local population activity by rhythm phase in human occipital cortex during a visual search task. Frontiers in Human Neuroscience, 4:197 [ PDF ] [ PubMed ]
  • Honey CJ, Thivierge JP, Sporns O. (2010) Can structure predict function in the human brain? NeuroImage, 52(3):766-776 [ PDF ] [ PubMed ]
  • Hagmann P, Cammoun L, Gigandet X, Gerhard S, Ellen Grant P, Wedeen V, Meuli R, Thiran JP, Honey CJ, Sporns O (2010) MR connectomics: Principles and challenges. Journal of Neuroscience Methods, 194(1): 34-35 [ PDF ] [ PubMed ]

2009

  • Honey CJ , Sporns O, Cammoun L, Gigandet X, Thiran JP, Meuli R, Hagmann P (2009) Predicting Human Resting-State Functional Connectivity from Structural Connectivity. Proc Natl Acad Sci USA, 106 (6):2035-40 [ PDF with SI ] [ PubMed ]

2008

  • Riedl V, Honey CJ (2008, Commentary) Alzheimer’s disease: a search for broken links. Journal of Neuroscience, 28(33):8148-9[ PDF ] [ PubMed ]
  • Hagmann P, Cammoun L, Gigandet X, Meuli R, Honey CJ, Wedeen VJ, Sporns O (2008) Mapping the Structural Core of Human Cerebral Cortex. PLoS Biology, 6(7): e159 [ PDF ] [ PubMed ]
  • Honey CJ , Sporns O (2008) Dynamical Consequences of Lesions in Cortical Networks. Human Brain Mapping, 29(7): 802-9[ PDF ] [ PubMed ]

2007

  • Sporns O, Honey CJ, Kötter R (2007) Identification and Classification of Hubs in Brain Networks. PLoS ONE, 2(10): e1049[ PDF ] [ PubMed ]
  • Honey CJ , Kötter R, Breakspear M, Sporns O (2007) Network Structure of Cerebral Cortex Shapes Functional Connectivity on Multiple Time Scales. Proc Natl Acad Sci USA, 104(24): 10240-5 [ PDF with SI ] [ PubMed ]
  • Townsend JT, Honey CJ (2007) Consequences of Base Time for Redundant Signals Experiments. Journal of Mathematical Psychology, 51(4): 242-265 [ PDF ] [ PubMed ]

2006

  • Sporns O, Honey CJ (2006, Commentary) Small Worlds in Big Brains. Proc Natl Acad Sci USA, 103(51): 19219-20 [ PDF ] [ PubMed ]